bento.ut.get_shape_metadata

bento.ut.get_shape_metadata(sdata, metadata_keys, shape_key)

Get shape metadata.

Parameters:

  • sdata (SpatialData) – Spatial formatted SpatialData object

  • metadata_keys (str or list of str) – Key(s) for sdata.shapes[shape_key][key] to use

  • shape_key (str) – Key for sdata.shapes to use, by default “transcripts”

Returns:

Returns sdata.shapes[shape_key][metadata_keys] as a pd.DataFrame

Return type:

pd.Dataframe