bento.pl.shape_stats

bento.pl.shape_stats(sdata, instance_key='cell_boundaries', nucleus_key='nucleus_boundaries', cols=['cell_boundaries_area', 'cell_boundaries_aspect_ratio', 'cell_boundaries_density', 'nucleus_boundaries_area', 'nucleus_boundaries_aspect_ratio', 'nucleus_boundaries_density'], s=3, color='lightseagreen', alpha=0.3, rug=False, fname=None)

Plot shape statistic distributions for each cell.

Parameters:

  • sdata (SpatialData) – Spatial formatted SpatialData

  • cols (list) – List of columns to plot

  • groupby (str, optional) – Column in obs to groupby, by default None