bento.tl.lp¶
- bento.tl.lp(sdata, instance_key='cell_boundaries', nucleus_key='nucleus_boundaries', groupby='feature_name')¶
Predict transcript subcellular localization patterns. Patterns include: cell edge, cytoplasmic, nuclear edge, nuclear, none
- Parameters:
sdata (SpatialData) – Spatial formatted SpatialData object
groupby (str or list of str, optional (default: None)) – Key in `sdata.points[points_key] to groupby, by default None. Always treats each cell separately
- Returns:
sdata –
- .table.uns[‘lp’]
Localization pattern indicator matrix.
- .table.uns[‘lpp’]
Localization pattern probabilities.
- Return type:
SpatialData