bento.tl.density

bento.tl.density(sdata, shape_key, recompute=False)

Compute the RNA density of each shape.

Parameters:

• sdata (SpatialData) – Spatial formatted SpatialData

• shape_key (str) – Key in sdata.shapes[shape_key] that contains the shape information.

Returns:

.shapes[shape_key][‘{shape}_density’]float

Density (molecules / shape area) of each polygon