Index

A

analyze_cells() (in module bento.tl)

analyze_samples() (in module bento.tl)

B

bento module bento.datasets module bento.io module

bento.pl module bento.pp module bento.tl module, [1], [2], [3], [4]

C

cell_area() (in module bento.tl) cell_aspect_ratio() (in module bento.tl) cell_bounds() (in module bento.tl) cell_density() (in module bento.tl) cell_moments() (in module bento.tl) cell_morph_open() (in module bento.tl)

cell_perimeter() (in module bento.tl) cell_radius() (in module bento.tl) cell_span() (in module bento.tl) cellplot() (in module bento.pl) coloc_quotient() (in module bento.tl) concatenate() (in module bento.io)

D

decompose_tensor() (in module bento.tl)

G

get_layers() (in module bento.pp)

get_points() (in module bento.pp)

I

is_nuclear() (in module bento.tl)

L

load_dataset() (in module bento.datasets) lp() (in module bento.tl) lp_diff() (in module bento.pl) (in module bento.tl) lp_dist() (in module bento.pl)

lp_gene_dist() (in module bento.pl) lp_genes() (in module bento.pl) lp_signatures() (in module bento.pl) (in module bento.tl) lp_stats() (in module bento.tl)

M

module bento bento.datasets bento.io bento.pl bento.pp bento.tl, [1], [2], [3], [4]

N

nucleus_area() (in module bento.tl) nucleus_area_ratio() (in module bento.tl)

nucleus_aspect_ratio() (in module bento.tl) nucleus_offset() (in module bento.tl)

Q

qc_metrics() (in module bento.pl)

R

raster_cell() (in module bento.tl)

read_h5ad() (in module bento.io)

S

select_tensor_rank() (in module bento.tl)

set_points() (in module bento.pp)

W

write_h5ad() (in module bento.io)