bento.tl.density

bento.tl.density(sdata, shape_key, recompute=False) → None

Compute RNA density (molecules per area) for each shape.

Parameters:

  • sdata (SpatialData) – Input SpatialData object

  • shape_key (str) – Key in sdata.shapes containing shape geometries

  • recompute (bool, default False) – Whether to force recomputation if feature exists

Returns:

Updates sdata.shapes[shape_key] with: - ‘{shape_key}_density’: Number of molecules divided by shape area

Return type:

None