bento.tl.comp

bento.tl.comp(sdata, points_key, shape_names) → SpatialData

Calculate the average gene composition for shapes across all cells.

Parameters:

• sdata (SpatialData) – SpatialData object.

• points_key (str) – Key for points DataFrame in sdata.points.

• shape_names (List[str]) – Names of shapes to calculate compositions for.

Returns:

Updated SpatialData object with average gene compositions for each shape stored in sdata.tables[“table”].uns[“comp_stats”].

Return type:

SpatialData