Index A | B | C | D | F | G | L | M | O | P | R | S | W A analyze_points() (in module bento.tl) analyze_shapes() (in module bento.tl) B bento module bento.ds module bento.geo module bento.io module bento.pl module, [1], [2], [3], [4] bento.tl module, [1], [2], [3] bento.ut module C coloc_quotient() (in module bento.tl) colocation() (in module bento.pl) (in module bento.tl) concatenate() (in module bento.io) count_points() (in module bento.geo) crop() (in module bento.geo) D density() (in module bento.pl) F factor() (in module bento.pl) fe() (in module bento.pl) (in module bento.tl) fe_fazal2019() (in module bento.tl) flux() (in module bento.pl) (in module bento.tl) flux_summary() (in module bento.pl) fluxmap() (in module bento.pl) (in module bento.tl) G geo_format() (in module bento.ut) get_dataset_info() (in module bento.ds) get_points() (in module bento.geo) get_points_metadata() (in module bento.geo) get_shape() (in module bento.geo) L load_dataset() (in module bento.ds) load_gene_sets() (in module bento.tl) lp() (in module bento.tl) lp_diff() (in module bento.pl) (in module bento.tl) lp_dist() (in module bento.pl) lp_gene_dist() (in module bento.pl) lp_genes() (in module bento.pl) lp_stats() (in module bento.tl) M module bento bento.ds bento.geo bento.io bento.pl, [1], [2], [3], [4] bento.tl, [1], [2], [3] bento.ut O obs_stats() (in module bento.pl) (in module bento.tl) P pheno_to_color() (in module bento.ut) points() (in module bento.pl) prepare() (in module bento.io) R read_h5ad() (in module bento.io) register_point_feature() (in module bento.tl) register_shape_feature() (in module bento.tl) rename_shapes() (in module bento.geo) S sample_data() (in module bento.ds) sc_format() (in module bento.ut) shapes() (in module bento.pl) signatures() (in module bento.pl) signatures_error() (in module bento.pl) sindex_points() (in module bento.geo) sync() (in module bento.ut) W write_h5ad() (in module bento.io)